PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7292_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28227.1 Da    PI: 7.3397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7292_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-1268111755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ErrRR+r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  RrC7292_p1  68 ISERRRRSRMKDKLYALRSLVPNI-----TKMDKASIVGDAVLYVQELQ 111
                 57*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30161110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1664127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1467116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-1268113No hitNo description
Gene3DG3DSA:4.10.280.109.6E-1768130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-968111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MERRVNALSN LNDLEVYNFL VDPNFDQLIN FIRGDDQAIE NPPLDFDLGG HLQNNSCFID  60
QNQSRTLISE RRRRSRMKDK LYALRSLVPN ITKMDKASIV GDAVLYVQEL QSQAKKLKAD  120
IAGLEASLNS TGGYQEPAPD AHKIQTFQSI KPPSKNIIEM DVIQVEEKGF YVRLVCNKGV  180
GVAPSLYKSL ESLTSFQVQN SNLSSPSPDR YLLTYALDGT CFKQSLNLPN LKLWITGSLL  240
NQGFEFAKTF T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935681e-168AB493568.1 Arabidopsis thaliana At2g28160 mRNA for hypothetical protein, partial cds, clone: RAAt2g28160.
GenBankBT0264461e-168BT026446.1 Arabidopsis thaliana At2g28160 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747064.11e-142PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
SwissprotQ0V7X41e-120FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A078GVH71e-141A0A078GVH7_BRANA; BnaA04g16280D protein
STRINGBra034392.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-111FER-like regulator of iron uptake